Wiki Page

A machine learning repository for microbiome datasets

Wiki Page

Visit the wiki page describing all MLRepo learning tasks.

Available Tasks

Download a single file containing all available tasks

Bacteremia

Diet

Antibiotics

Age

IBD

Gender

Vaginal

Geography

Body Habitat

Cancer

Obesity

Diabetes

Cirrhosis


Interested in adding a new dataset or task? See our instructions

If you use this package, make sure to cite at

@article{vangay2019microbiome,
  title={Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks},
  author={Vangay, Pajau and Hillmann, Benjamin M and Knights, Dan},
  journal={Gigascience},
  volume={8},
  number={5},
  pages={giz042},
  year={2019},
  publisher={Oxford University Press}
}