A machine learning repository for microbiome datasets
Overview | |
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Description | Plant-based vs. Animal-based diet, Cross-over study |
Study design | Longitudinal |
Topic area | Diet |
Attributes | Diet: Plant, Animal Day: -4 to -1 (baseline), 0 to 4 (diet), 5 to 10 (washout) |
Dataset notes | Longitudinal data available, but subset by last day of intervention to compare groups |
Number of samples | 235 |
Number of subjects | 11 |
Other Details | |
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16s hypervariable region | V4 |
Targeted amplicon size | 282 |
Sequencing technology | Illumina MiSeq |
Fraction of sequences mapped to database | |
Processed sequences | david2014.fasta.gz |
Raw metadata file | mapping-orig.txt |
Raw sequence source | https://www.mg-rast.org/linkin.cgi?project=mgp6248 |
Literature source | https://www.ncbi.nlm.nih.gov/pubmed/24336217 |