A machine learning repository for microbiome datasets
| Overview | |
|---|---|
| Description | Vaginal samples from four ethnic groups nugent scores for bacterial vaginosis |
| Study design | Cross-Sectional |
| Topic area | Bacterial Vaginosis |
| Attributes | Ethnic_Group: White, Black, Asian, Hispanic Nugent_score_category: Low, Intermediate, High Nugent_score pH |
| Dataset notes | |
| Number of samples | 396 |
| Number of subjects | 396 |
| Other Details | |
|---|---|
| 16s hypervariable region | V12 |
| Targeted amplicon size | 240 |
| Sequencing technology | 454 |
| Fraction of sequences mapped to database | |
| Processed sequences | ravel2011.fasta.gz |
| Raw metadata file | mapping-orig.txt |
| Raw sequence source | https://www.ncbi.nlm.nih.gov/sra/SRA022855 |
| Literature source | https://www.ncbi.nlm.nih.gov/pubmed/20534435 |