A machine learning repository for microbiome datasets
Overview | |
---|---|
Description | Healthy, Crohn’s Disease, or Ulcerative Colitis patients |
Study design | Cross-Sectional |
Topic area | IBD |
Attributes | ULCERATIVE_COLIT_OR_CROHNS_DIS: Crohn’s disease, Healthy, Ulcerative Colitis BODY_SITE: UBERON:ileal mucosa, UBERON:feces, UBERON:mucosa of descending colon |
Dataset notes | Cross-sectional study with different subjects for all sample types |
Number of samples | 231 |
Number of subjects | 231 |
Other Details | |
---|---|
16s hypervariable region | V35 |
Targeted amplicon size | 569 |
Sequencing technology | 454 |
Fraction of sequences mapped to database | |
Processed sequences | morgan2012.fasta.gz |
Raw metadata file | mapping-orig.txt |
Raw sequence source | https://www.ncbi.nlm.nih.gov/bioproject/82111 |
Literature source | https://www.ncbi.nlm.nih.gov/pubmed/23013615 |