A machine learning repository for microbiome datasets
| Overview | |
|---|---|
| Description | Biopsies from IBD patients prior to treatment |
| Study design | Cross-Sectional |
| Topic area | IBD |
| Attributes | DIAGNOSIS: no, IC, CD, UC BODY_SITE: UBERON:feces, UBERON:rectum, UBERON:colon, UBERON:ileum |
| Dataset notes | |
| Number of samples | 1321 |
| Number of subjects | 668 |
| Other Details | |
|---|---|
| 16s hypervariable region | V4 |
| Targeted amplicon size | 173 |
| Sequencing technology | Illumina MiSeq |
| Fraction of sequences mapped to database | |
| Processed sequences | https://qiita.ucsd.edu/download/33519 |
| Raw metadata file | mapping-orig.txt |
| Raw sequence source | https://qiita.ucsd.edu/download/33520 |
| Literature source | https://www.ncbi.nlm.nih.gov/pubmed/24629344 |